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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53165025_53166598_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53165025 - 53166598
Intron Length:
1574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
ATGTTTATAACA
Flanking Amino Acid:
KAVLVVHPDKATGQPYEQYA
Intron Amino Acid Position:
1263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
60.3
0.32
1.6
69.97
36.3

Associated Gene:

Gene:
GAK
Ensembl Gene ID:
ENSAPLG00000009451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009893
53098780 - 53166800
68021