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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53192321_53193731_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53192321 - 53193731
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
TSFFVSDFTEVDDNVTRHLD
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
67.2
0.39
1.7
80.8
36.5
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
PIGG
Ensembl Gene ID:
ENSAPLG00000030626
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042671
53191370 - 53262590
71221
ENSAPLT00000030996
53191370 - 53262669
71300
ENSAPLT00000027455
53183281 - 53262590
79310