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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53195710_53198212_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53195710 - 53198212
Intron Length:
2503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATCT
Flanking Amino Acid:
FISSAFEKRSGPLTQPELVQ
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
78.7
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.6
0.55
1
69.5
41.6
Minor 5ss
37
-1.5
3.3
48.9
41.6
Minor BPS
66.5
0.6
1.8
88.81
35.8

Associated Gene:

Gene:
PIGG
Ensembl Gene ID:
ENSAPLG00000030626
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042671
53191370 - 53262590
71221
ENSAPLT00000030996
53191370 - 53262669
71300
ENSAPLT00000027455
53183281 - 53262590
79310