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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53198426_53205126_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53198426 - 53205126
Intron Length:
6701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TTTTTCCCATTA
Flanking Amino Acid:
LEENTPAYEKDPGYEQFKIA
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
80.3
34.3
Major BPS
69.2
0.48
1
61
37.1
Major PPT
79.3
0.66
0.8
79.9
27.3
Minor 5ss
35.2
-1.7
3.1
49.5
46.7
Minor BPS
47.5
-0.1
2
67.86
38.9

Associated Gene:

Gene:
PIGG
Ensembl Gene ID:
ENSAPLG00000030626
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042671
53191370 - 53262590
71221
ENSAPLT00000030996
53191370 - 53262669
71300
ENSAPLT00000027455
53183281 - 53262590
79310