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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53208351_53217183_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53208351 - 53217183
Intron Length:
8833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACCG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACAACTTTCACC
Flanking Amino Acid:
ILENSRLPVKNPVASSSSWS
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
65.1
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
26.8
-2.7
2.8
30.9
42.6
Minor BPS
49.8
-0
1.8
58
40.9

Associated Gene:

Gene:
PIGG
Ensembl Gene ID:
ENSAPLG00000030626
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042671
53191370 - 53262590
71221
ENSAPLT00000030996
53191370 - 53262669
71300
ENSAPLT00000027455
53183281 - 53262590
79310