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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53224840_53229561_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53224840 - 53229561
Intron Length:
4722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
PWQHDSKDISKGITEARFVY
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.8
0.69
0.7
78.8
29.3
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
PIGG
Ensembl Gene ID:
ENSAPLG00000030626
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042671
53191370 - 53262590
71221
ENSAPLT00000030996
53191370 - 53262669
71300
ENSAPLT00000027455
53183281 - 53262590
79310