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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53238819_53261989_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53238819 - 53261989
Intron Length:
23171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAAG
5'SS Class:
major
3'SS Sequence:
TGTCACCATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
GGGTCCTGAAGT
Flanking Amino Acid:
LLCYLSSEVSRFCARALEGP
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.7
41.1
Major BPS
69.6
0.49
1
59.5
39
Major PPT
69.3
0.43
1
59.3
41.7
Minor 5ss
38.8
-1.3
2.8
48.4
47.4
Minor BPS
56.3
0.28
1.8
70.67
45.5

Associated Gene:

Gene:
PIGG
Ensembl Gene ID:
ENSAPLG00000030626
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042671
53191370 - 53262590
71221