Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5324760_5331997_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5324760 - 5331997

Intron Length:

7238

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAA

U12 Branch Point Sequence:

ATCTTCTTAACG

Flanking Amino Acid:

VPYTPLLSQTGPNLPKAQVK

Intron Amino Acid Position:

1361

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

73.9

36.8

Major BPS

82.2

0.8

71.9

35.8

Major PPT

83.9

0.76

0.7

81.3

23.8

Minor 5ss

29.6

-2.3

3.5

41.1

45.6

Minor BPS

0.68

1.3

73.16

39.6

Associated Gene:

Gene:

DCC

Ensembl Gene ID:

ENSAPLG00000009368

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009845

5323903 - 5600180

276278

ENSAPLT00000044019

5323903 - 5571574

247672