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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53262107_53262364_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53262107 - 53262364
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAACTAC
5'SS Class:
major
3'SS Sequence:
GTTTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCTAT
U12 Branch Point Sequence:
TTTTTGTTACAG
Flanking Amino Acid:
CIKTQKLLHLRNAAAVGHGC
Intron Amino Acid Position:
863

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67.8
33.8
Major BPS
58.7
0.22
1.5
58.5
47.9
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
38
-1.3
3.1
49.2
47.3
Minor BPS
47.5
-0.3
2.4
63.72
44.3

Associated Gene:

Gene:
PIGG
Ensembl Gene ID:
ENSAPLG00000030626
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042671
53191370 - 53262590
71221