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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53304238_53305190_F

Intron Information:

Intron Rank:
134823
Intron Class:
major
Intron Phase:
Intron Coordinates:
53304238 - 53305190
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAGT
5'SS Class:
strong_major
3'SS Sequence:
ATCATTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.7
34.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73.5
0.53
0.9
70.9
39
Minor 5ss
37.5
-1.4
2.8
52.1
44.3
Minor BPS
61.5
0.34
1.5
69.53
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022510
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018212
53302841 - 53305966
3126