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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53305298_53305534_F

Intron Information:

Intron Rank:
134824
Intron Class:
major
Intron Phase:
Intron Coordinates:
53305298 - 53305534
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
34.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.8
0.74
0.9
74.1
41
Minor 5ss
42
-0.9
2.9
59.3
45.1
Minor BPS
51.3
0.12
2
75.69
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022510
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018212
53302841 - 53305966
3126