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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53328311_53331936_F

Intron Information:

Intron Rank:
145091
Intron Class:
major
Intron Phase:
Intron Coordinates:
53328311 - 53331936
Intron Length:
3626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGG
5'SS Class:
major
3'SS Sequence:
TGTTTCTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GATTCTATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.7
44.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.3
0.64
0.9
74.5
35.4
Minor 5ss
31
-2.2
3.2
39.7
45.9
Minor BPS
57.5
0.32
1.6
73.53
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028256
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030839
53323030 - 53333901
10872