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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53332001_53332073_F

Intron Information:

Intron Rank:
145092
Intron Class:
major
Intron Phase:
Intron Coordinates:
53332001 - 53332073
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTCTTCATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.7
0.76
0.7
77.1
31.7
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
58
0.25
1.8
71.17
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028256
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030839
53323030 - 53333901
10872