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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53559854_53561996_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53559854 - 53561996
Intron Length:
2143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATCT
Flanking Amino Acid:
SIIFNHDTSQVPNFINATLP
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
0.7
81.7
28.6
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
67.7
0.63
1.6
82.72
39.3

Associated Gene:

Gene:
TRABD2A
Ensembl Gene ID:
ENSAPLG00000026690
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033636
53508082 - 53585889
77808