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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53675957_53676705_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53675957 - 53676705
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
GATCACTTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCCATCTGATCA
Flanking Amino Acid:
KMPRWVSTSGVQLACGPSFL
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70.2
0.45
0.9
65.7
40.3
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
47.3
-0.2
1.7
56.15
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041617
53675730 - 53712759
37030
ENSAPLT00000008046
53675730 - 53711872
36143