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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53676832_53688997_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53676832 - 53688997
Intron Length:
12166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTACTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTCCTCCTAACC
Flanking Amino Acid:
PATSDSVPLIAQYFASIMVI
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1
75
38.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
83.5
0.75
0.8
77.4
30.1
Minor 5ss
38.2
-1.3
3.1
49.4
46.8
Minor BPS
61
0.32
1.7
72.33
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041617
53675730 - 53712759
37030
ENSAPLT00000025946
53675730 - 53711974
36245
ENSAPLT00000008046
53675730 - 53711872
36143
ENSAPLT00000046151
53675730 - 53713711
37982