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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53689085_53690370_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53689085 - 53690370
Intron Length:
1286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCACTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TGTTCCTCATCT
Flanking Amino Acid:
PADSGEKISLGITVLLSLTV
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
76.3
0.59
0.8
69.9
30.7
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
66.2
0.59
1.8
85.48
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046151
53675730 - 53713711
37982
ENSAPLT00000041617
53675730 - 53712759
37030
ENSAPLT00000025946
53675730 - 53711974
36245
ENSAPLT00000008046
53675730 - 53711872
36143