About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53690566_53691578_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53690566 - 53691578
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATTAT
5'SS Class:
major
3'SS Sequence:
TCCCTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTGCTCTGACCT
Flanking Amino Acid:
YISNGEWDLVGVPGKRNEMY
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
77.3
33.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
80.4
0.68
0.7
76.5
25.6
Minor 5ss
40.8
-1
3
49.3
47
Minor BPS
48.5
-0
1.8
65.52
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041617
53675730 - 53712759
37030
ENSAPLT00000025946
53675730 - 53711974
36245
ENSAPLT00000008046
53675730 - 53711872
36143
ENSAPLT00000046151
53675730 - 53713711
37982