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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53691747_53693939_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53691747 - 53693939
Intron Length:
2193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
ACGCTATTGACT
Flanking Amino Acid:
YSGSCQYIPPGILKSTCYID
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
75.6
0.58
0.9
69.3
36
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
49.4
0.03
1.6
63.36
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025946
53675730 - 53711974
36245
ENSAPLT00000008046
53675730 - 53711872
36143
ENSAPLT00000046151
53675730 - 53713711
37982
ENSAPLT00000041617
53675730 - 53712759
37030