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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53697072_53698231_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53697072 - 53698231
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TATTTTCCAACA
Flanking Amino Acid:
VLITNAWLQMYWVDIYLSWD
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
78.7
0.65
0.9
74.7
34.7
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
52.2
0.06
1.8
69.22
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041617
53675730 - 53712759
37030
ENSAPLT00000025946
53675730 - 53711974
36245
ENSAPLT00000008046
53675730 - 53711872
36143
ENSAPLT00000046151
53675730 - 53713711
37982