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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53758071_53758192_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53758071 - 53758192
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTGCAT
U12 Branch Point Sequence:
TTCTCCCCACAG
Flanking Amino Acid:
GTSTGLIFVASQIEGVILMI
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
53.6
0.09
1.4
65.3
41.5
Major PPT
78.7
0.65
0.7
72.6
25.7
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
42.9
-0.6
2.2
53.67
46.6

Associated Gene:

Gene:
SLC49A3
Ensembl Gene ID:
ENSAPLG00000008297
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008625
53754522 - 53771074
16553