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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53758351_53759471_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53758351 - 53759471
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GGTGCATTTATT
Flanking Amino Acid:
SALASIVFAVASRFRGQAIA
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
36.5
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
77.4
0.62
0.9
70.4
35.7
Minor 5ss
35.2
-1.7
2.8
38.5
40.7
Minor BPS
47.9
-0
2
66.78
43.6

Associated Gene:

Gene:
SLC49A3
Ensembl Gene ID:
ENSAPLG00000008297
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008625
53754522 - 53771074
16553