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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53766753_53770945_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53766753 - 53770945
Intron Length:
4193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
CTCTCCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATGCGCACCT
Flanking Amino Acid:
VCLLNCSNAMLWLTFAPVAD
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.5
40.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
82.3
0.73
0.7
76.6
25.4
Minor 5ss
33.8
-1.8
3
40.2
39.7
Minor BPS
39.3
-0.7
2.5
60.42
48.8

Associated Gene:

Gene:
SLC49A3
Ensembl Gene ID:
ENSAPLG00000008297
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008625
53754522 - 53771074
16553