Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53799871_53836019_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53799871 - 53836019

Intron Length:

36149

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCTGAG

5'SS Class:

major

3'SS Sequence:

CTCTTTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TACTTTATAATA

Flanking Amino Acid:

GNKCATGENQTPKMLTRKIK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

1.2

64.9

41.2

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

88.2

0.86

0.6

24.1

Minor 5ss

43.7

-0.7

57.3

47.4

Minor BPS

55.6

0.17

1.5

64.46

36.3

Associated Gene:

Gene:

PCGF3

Ensembl Gene ID:

ENSAPLG00000012623

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013148

53799796 - 53858268

58473