Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53829317_53836019_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

53829317 - 53836019

Intron Length:

6703

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGCCTC

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TACTTTATAATA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

68.8

42.3

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

88.2

0.86

0.6

24.1

Minor 5ss

48.5

-0.1

2.8

67.7

43.5

Minor BPS

55.6

0.17

1.5

64.46

36.3

Associated Gene:

Gene:

PCGF3

Ensembl Gene ID:

ENSAPLG00000012623

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012715

53829274 - 53862524

33251