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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53839253_53850456_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53839253 - 53850456
Intron Length:
11204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTATG
5'SS Class:
major
3'SS Sequence:
TTTTCCTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTCCTTGATA
Flanking Amino Acid:
IHQSHPLQYIGHDRTMQDIV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.7
44.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.9
0.65
0.9
76.8
31.9
Minor 5ss
37.5
-1.4
3.1
42.2
44.7
Minor BPS
86.8
1.15
0.8
90.42
23.7

Associated Gene:

Gene:
PCGF3
Ensembl Gene ID:
ENSAPLG00000012623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013148
53799796 - 53858268
58473
ENSAPLT00000012715
53829274 - 53862524
33251
ENSAPLT00000035816
53804731 - 53858268
53538
ENSAPLT00000026994
53804731 - 53856451
51721
ENSAPLT00000024169
53815747 - 53858268
42522