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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53850513_53851496_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53850513 - 53851496
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CAATTTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CAATTTTTAACA
Flanking Amino Acid:
VYKLVPGLQEAEMKKQREFY
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.8
0.54
1
69.5
40
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
68.5
0.58
1.2
68.62
37.8

Associated Gene:

Gene:
PCGF3
Ensembl Gene ID:
ENSAPLG00000012623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013148
53799796 - 53858268
58473
ENSAPLT00000012715
53829274 - 53862524
33251
ENSAPLT00000035816
53804731 - 53858268
53538
ENSAPLT00000026994
53804731 - 53856451
51721
ENSAPLT00000024169
53815747 - 53858268
42522