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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53851608_53852061_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53851608 - 53852061
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACAGT
5'SS Class:
major
3'SS Sequence:
TTTCTTATCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GCTTTCTTATCT
Flanking Amino Acid:
AKQHLDSHRNGETKTDENSN
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
67.8
43.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
74.7
0.56
1
79.9
30.9
Minor 5ss
40.6
-1
3.1
54.6
44.5
Minor BPS
67.7
0.63
1.6
80.05
42

Associated Gene:

Gene:
PCGF3
Ensembl Gene ID:
ENSAPLG00000012623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013148
53799796 - 53858268
58473
ENSAPLT00000012715
53829274 - 53862524
33251
ENSAPLT00000035816
53804731 - 53858268
53538
ENSAPLT00000026994
53804731 - 53856451
51721
ENSAPLT00000024169
53815747 - 53858268
42522