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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53852151_53853404_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53852151 - 53853404
Intron Length:
1254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATCA
5'SS Class:
major
3'SS Sequence:
CTTTTTACTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCCTTTTTACT
Flanking Amino Acid:
DNDYHRSDEQVSICLECNSS
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
67.4
34.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75.1
0.56
1
76.5
31
Minor 5ss
31.4
-2.1
3.2
39
46.3
Minor BPS
59.3
0.37
1.6
76.65
40

Associated Gene:

Gene:
PCGF3
Ensembl Gene ID:
ENSAPLG00000012623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024169
53815747 - 53858268
42522
ENSAPLT00000013148
53799796 - 53858268
58473
ENSAPLT00000012715
53829274 - 53862524
33251
ENSAPLT00000035816
53804731 - 53858268
53538
ENSAPLT00000026994
53804731 - 53856451
51721