Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53853543_53856370_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53853543 - 53856370

Intron Length:

2828

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATATTT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTTGCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAC

U12 Branch Point Sequence:

AACAAATTAACT

Flanking Amino Acid:

KKLNLSSFNELDILCNEEIL

Intron Amino Acid Position:

201

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

83.5

28.8

Major BPS

73.1

0.57

0.9

73.7

27.1

Major PPT

81.8

0.72

76.9

42.1

Minor 5ss

43.9

-0.7

3.1

65.3

45.8

Minor BPS

49.8

0.07

1.8

67.18

42.5

Associated Gene:

Gene:

PCGF3

Ensembl Gene ID:

ENSAPLG00000012623

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013148

53799796 - 53858268

58473

ENSAPLT00000012715

53829274 - 53862524

33251

ENSAPLT00000035816

53804731 - 53858268

53538

ENSAPLT00000024169

53815747 - 53858268

42522