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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_53856452_53858220_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53856452 - 53858220
Intron Length:
1769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAACT
Flanking Amino Acid:
FVVVTRWRFKKAPLLLHYRP
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
67.7
37.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
85.9
0.81
0.8
80.6
31.5
Minor 5ss
38.3
-1.3
3
50.3
46.3
Minor BPS
88.3
1.28
0.9
96.56
28.2

Associated Gene:

Gene:
PCGF3
Ensembl Gene ID:
ENSAPLG00000012623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024169
53815747 - 53858268
42522
ENSAPLT00000013148
53799796 - 53858268
58473
ENSAPLT00000012715
53829274 - 53862524
33251
ENSAPLT00000035816
53804731 - 53858268
53538