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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54064113_54065977_R

Intron Information:

Intron Rank:
128992
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
54064113 - 54065977
Intron Length:
1865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTATTTT
5'SS Class:
weak_major
3'SS Sequence:
CCAATCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTGTATTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.3
73.8
37.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
70.1
0.45
0.9
60.9
39.8
Minor 5ss
47
-0.3
2.7
67.4
43.7
Minor BPS
53
0.09
2
71.68
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016549
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047403
54061532 - 54066963
5432