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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54127737_54174286_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54127737 - 54174286
Intron Length:
46550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGACAAT
U12 Branch Point Sequence:
TGTGACTGACAA
Flanking Amino Acid:
EVMRQGIRDKYGIKKKEEKE
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
50
0
1.4
59.1
44.1
Major PPT
82.4
0.73
0.7
76.8
25.2
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
43
-0.5
2
55.51
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020781
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036707
54127539 - 54247153
119615