About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54174463_54245132_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54174463 - 54245132
Intron Length:
70670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTCTCTTATGC
Flanking Amino Acid:
MDFVMKQALGGATKDMGKML
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.9
0.65
0.8
72.7
37.5
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
55.8
0.16
1.9
71.17
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020781
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036707
54127539 - 54247153
119615