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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54382919_54386044_R

Intron Information:

Intron Rank:
129109
Intron Class:
major
Intron Phase:
Intron Coordinates:
54382919 - 54386044
Intron Length:
3126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TTTCTCCCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
82.4
0.73
0.7
76.9
25.2
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
45.1
-0.3
2.2
65.62
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016651
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024551
54381892 - 54387255
5364