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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54439803_54440237_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54439803 - 54440237
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
AATCATTTATTT
Flanking Amino Acid:
TLVLFPNVDAGSKEMVRVMR
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
85.3
0.79
0.7
81.6
30.4
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
48.8
-0
1.7
66.1
38.5

Associated Gene:

Gene:
GNE
Ensembl Gene ID:
ENSAPLG00000005602
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005827
54436339 - 54450781
14443