Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54441274_54442372_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54441274 - 54442372

Intron Length:

1099

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TCTCATATTACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTACATTTAAAT

Flanking Amino Acid:

LKLQFGKQYPCSKIYGDGNA

Intron Amino Acid Position:

385

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.8

80.6

31.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

79.6

0.67

0.9

72.9

35.8

Minor 5ss

37.1

-1.5

2.7

44.2

37.1

Minor BPS

0.39

1.6

77.07

38.6

Associated Gene:

Gene:

GNE

Ensembl Gene ID:

ENSAPLG00000005602

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005827

54436339 - 54450781

14443