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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54446870_54447878_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54446870 - 54447878
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTATCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCTTTTTTACTC
Flanking Amino Acid:
ENFVTLITGTGIGGGIVHQH
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
83.2
0.75
0.9
77.2
36.9
Minor 5ss
32.5
-2
3.1
41.1
45.5
Minor BPS
60.7
0.32
1.6
68.66
38.1

Associated Gene:

Gene:
GNE
Ensembl Gene ID:
ENSAPLG00000005602
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005827
54436339 - 54450781
14443