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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54448844_54449545_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54448844 - 54449545
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTACTTAATT
Flanking Amino Acid:
NTKAESILRTAGTALGLGVV
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.5
0.98
0.7
92.4
26.2
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
77.2
0.93
1.4
88.84
36.2

Associated Gene:

Gene:
GNE
Ensembl Gene ID:
ENSAPLG00000005602
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005827
54436339 - 54450781
14443