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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54456963_54459277_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
54456963 - 54459277
Intron Length:
2315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTATGTTGC
5'SS Class:
weak_major
3'SS Sequence:
GCGTTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TGGGCATTAACA
Flanking Amino Acid:
KQPFADVIGYVAAEEAFVND
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.2
58.8
41.3
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
73.7
0.53
1
69.2
41.8
Minor 5ss
48.6
-0.1
2.4
61.5
43.4
Minor BPS
60.8
0.34
1.8
69.37
42.6

Associated Gene:

Gene:
CLTA
Ensembl Gene ID:
ENSAPLG00000005540
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029553
54456791 - 54469685
12895