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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54460831_54461870_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54460831 - 54461870
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTAAATCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CAATTCTTAAAT
Flanking Amino Acid:
EEQKERLEQLDANSRKQEAE
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
66.1
45
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
70.9
0.47
0.9
67.1
39
Minor 5ss
31.8
-2.1
3.1
36.6
41.8
Minor BPS
67
0.61
1.4
75.09
41.2

Associated Gene:

Gene:
CLTA
Ensembl Gene ID:
ENSAPLG00000005540
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005726
54456791 - 54469685
12895
ENSAPLT00000029553
54456791 - 54469685
12895
ENSAPLT00000021198
54456791 - 54469685
12895