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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54463874_54469471_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54463874 - 54469471
Intron Length:
5598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGGCGC
5'SS Class:
major
3'SS Sequence:
TATTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
TATTTCTTTACA
Flanking Amino Acid:
ALQAADGFAAGAVDGVINGD
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
50.2
46.5
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
89.7
0.89
0.7
84.3
30.3
Minor 5ss
30.5
-2.2
3.5
41.9
45
Minor BPS
71.8
0.68
1.5
80.05
35.9

Associated Gene:

Gene:
CLTA
Ensembl Gene ID:
ENSAPLG00000005540
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005726
54456791 - 54469685
12895
ENSAPLT00000029553
54456791 - 54469685
12895
ENSAPLT00000021198
54456791 - 54469685
12895