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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54485080_54489212_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54485080 - 54489212
Intron Length:
4133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTGTTTTGAAAA
Flanking Amino Acid:
IFFTASGMDEMAVEFLHELD
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.1
38.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
92.6
0.96
0.6
88.3
21.3
Minor 5ss
34
-1.8
2.9
41.6
45
Minor BPS
52.5
0.07
1.5
61.75
38.2

Associated Gene:

Gene:
NANS
Ensembl Gene ID:
ENSAPLG00000005457
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005647
54484550 - 54492508
7959