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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54495616_54498444_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54495616 - 54498444
Intron Length:
2829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGGTTTTGATT
Flanking Amino Acid:
SPVDRLLFLKHARSPTWEYD
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.3
81.8
38.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.5
0.69
0.9
74.1
40.3
Minor 5ss
40.7
-1
2.8
50.8
39
Minor BPS
59.4
0.38
1.3
73.17
39

Associated Gene:

Gene:
TRIM14
Ensembl Gene ID:
ENSAPLG00000005302
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005474
54495080 - 54504157
9078