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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54498538_54499111_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54498538 - 54499111
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGCA
5'SS Class:
major
3'SS Sequence:
GATTTCTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTACCTAAACT
Flanking Amino Acid:
QKPLEVRLKEDVFSSLNATT
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
69.6
34.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
70
0.45
1
61.9
44.1
Minor 5ss
39.1
-1.2
3
50.7
45.7
Minor BPS
69
0.67
1.8
84.56
42.1

Associated Gene:

Gene:
TRIM14
Ensembl Gene ID:
ENSAPLG00000005302
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005474
54495080 - 54504157
9078