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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54499275_54499908_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54499275 - 54499908
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGTATTG
5'SS Class:
major
3'SS Sequence:
TTCCTGCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
CTGTCCATACTA
Flanking Amino Acid:
QNNDIIQFLEKSIEIEKELQ
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
61.4
40
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
75.8
0.58
0.8
73.1
31.8
Minor 5ss
34.8
-1.7
3.4
46.7
48.7
Minor BPS
50.1
-0
1.9
63.66
43.3

Associated Gene:

Gene:
TRIM14
Ensembl Gene ID:
ENSAPLG00000005302
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005474
54495080 - 54504157
9078