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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54517786_54518737_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54517786 - 54518737
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
GTCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
ATACATTTAAGC
Flanking Amino Acid:
NPNNRQSEQTLCVVCMCDFE
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
89.4
0.89
0.7
87.9
29.5
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
49.3
-0
1.8
60.2
38.5

Associated Gene:

Gene:
RNF38
Ensembl Gene ID:
ENSAPLG00000005157
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005345
54513395 - 54533585
20191