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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54521077_54521855_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54521077 - 54521855
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTTGCTCTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGAGCCTTATCA
Flanking Amino Acid:
PYHPSLLPYVLSMLPVPPAV
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.2
36.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
78
0.63
0.8
73.7
31.3
Minor 5ss
44.4
-0.6
2.8
64
40.1
Minor BPS
60.7
0.33
1.7
69.1
42.9

Associated Gene:

Gene:
RNF38
Ensembl Gene ID:
ENSAPLG00000005157
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005345
54513395 - 54533585
20191