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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54521963_54525181_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54521963 - 54525181
Intron Length:
3219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATCT
Flanking Amino Acid:
PLHQEVSFGVPYTPFMPRRF
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
85.6
30.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.2
0.72
0.8
77.9
30.6
Minor 5ss
44.2
-0.6
2.9
66.4
38.5
Minor BPS
66.6
0.6
1.6
78.81
43.9

Associated Gene:

Gene:
RNF38
Ensembl Gene ID:
ENSAPLG00000005157
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005345
54513395 - 54533585
20191