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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54527124_54532632_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54527124 - 54532632
Intron Length:
5509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTTATT
Flanking Amino Acid:
NAMMVDIHDQMLQACSVQHL
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
100
1.24
0.5
100
0
Major PPT
84.2
0.77
0.8
81.7
34.2
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
55.3
0.25
1.8
78.34
37.7

Associated Gene:

Gene:
RNF38
Ensembl Gene ID:
ENSAPLG00000005157
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005345
54513395 - 54533585
20191